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Commit 6f685b64 by Chiara Antonini
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matlab code

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Showing 6 changed files with 168 additions and 0 deletions
Models/EGFR_IG1FRmodel.sbproj 0 → 100644
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Models/PulseGenerator.sbproj 0 → 100644
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Models/PulseGenerator.xml 0 → 100644
<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level2/version4" level="2" version="4">
<annotation>
<SimBiology xmlns="http://www.mathworks.com">
<Version Major="5" Minor="0" Point="0"/>
</SimBiology>
</annotation>
<model id="mw5e5242c9_f106_49c1_ad79_a05890c967e2" name="ReteSintetica">
<listOfCompartments>
<compartment id="mwa3854151_cd74_4ccb_9185_e480b212e53a" name="unnamed" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="mwecf685eb_710c_458e_a826_ac4316797fec" name="R2_active" compartment="mwa3854151_cd74_4ccb_9185_e480b212e53a" initialAmount="0"/>
<species id="mw0769da31_7f58_4816_a3d5_89813f4ae836" name="S1" compartment="mwa3854151_cd74_4ccb_9185_e480b212e53a" initialAmount="470" boundaryCondition="true"/>
<species id="mw2cc70178_a739_438f_b5e7_d2ff73bc3376" name="Y_active" compartment="mwa3854151_cd74_4ccb_9185_e480b212e53a" initialAmount="0"/>
</listOfSpecies>
<listOfParameters>
<parameter id="mw6d98d26e_e7e9_4d97_8345_f82836972796" name="k1" value="5"/>
<parameter id="mwa02b0398_454f_4927_b65e_7cc91bf2bbdc" name="K1" value="1"/>
<parameter id="mwf11e97f2_87b4_40c3_8e01_06f18e79c7c7" name="k12" value="20"/>
<parameter id="mw12802443_ef80_47b5_8c03_a43aaf18515e" name="K2" value="100"/>
<parameter id="mwf52fa444_2fc9_4977_a76e_b7901005e084" name="lambda_2" value="0.01"/>
<parameter id="mw748972a5_3f1f_4c2a_a308_1fdf0f8fc959" name="lambda" value="0.04"/>
</listOfParameters>
<listOfReactions>
<reaction id="mw3f8353f6_d80b_45cf_916b_b27bd04aa9bd" reversible="false" fast="false">
<listOfReactants>
<speciesReference species="mwecf685eb_710c_458e_a826_ac4316797fec"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> mwf52fa444_2fc9_4977_a76e_b7901005e084 </ci>
<ci> mwecf685eb_710c_458e_a826_ac4316797fec </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="mwd5e6bcfb_8775_4fe8_8ea4_7ebcf1262b7f" reversible="false" fast="false">
<listOfProducts>
<speciesReference species="mwecf685eb_710c_458e_a826_ac4316797fec"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> mw6d98d26e_e7e9_4d97_8345_f82836972796 </ci>
<apply>
<divide/>
<apply>
<power/>
<apply>
<divide/>
<ci> mw0769da31_7f58_4816_a3d5_89813f4ae836 </ci>
<ci> mwa02b0398_454f_4927_b65e_7cc91bf2bbdc </ci>
</apply>
<cn type="integer"> 3 </cn>
</apply>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<power/>
<apply>
<divide/>
<ci> mw0769da31_7f58_4816_a3d5_89813f4ae836 </ci>
<ci> mwa02b0398_454f_4927_b65e_7cc91bf2bbdc </ci>
</apply>
<cn type="integer"> 3 </cn>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="mwa58b7194_967a_4057_81dd_cdd686063324" reversible="false" fast="false">
<listOfReactants>
<speciesReference species="mw2cc70178_a739_438f_b5e7_d2ff73bc3376"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> mw748972a5_3f1f_4c2a_a308_1fdf0f8fc959 </ci>
<ci> mw2cc70178_a739_438f_b5e7_d2ff73bc3376 </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="mwc152b0b4_94f2_475e_92fc_26eaee472a99" reversible="false" fast="false">
<listOfProducts>
<speciesReference species="mw2cc70178_a739_438f_b5e7_d2ff73bc3376"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<apply>
<divide/>
<ci> mwf11e97f2_87b4_40c3_8e01_06f18e79c7c7 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<power/>
<apply>
<divide/>
<ci> mwecf685eb_710c_458e_a826_ac4316797fec </ci>
<ci> mw12802443_ef80_47b5_8c03_a43aaf18515e </ci>
</apply>
<cn type="integer"> 3 </cn>
</apply>
</apply>
</apply>
<apply>
<divide/>
<apply>
<power/>
<apply>
<divide/>
<ci> mw0769da31_7f58_4816_a3d5_89813f4ae836 </ci>
<ci> mwa02b0398_454f_4927_b65e_7cc91bf2bbdc </ci>
</apply>
<cn type="integer"> 3 </cn>
</apply>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<power/>
<apply>
<divide/>
<ci> mw0769da31_7f58_4816_a3d5_89813f4ae836 </ci>
<ci> mwa02b0398_454f_4927_b65e_7cc91bf2bbdc </ci>
</apply>
<cn type="integer"> 3 </cn>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
</listOfReactions>
<listOfEvents>
<event id="mwb0716424_3762_425b_b959_3ca6703abfcb">
<trigger>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<geq/>
<csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
<cn type="integer"> 50 </cn>
</apply>
</math>
</trigger>
<listOfEventAssignments>
<eventAssignment variable="mw0769da31_7f58_4816_a3d5_89813f4ae836">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<cn type="integer"> 0 </cn>
</math>
</eventAssignment>
</listOfEventAssignments>
</event>
</listOfEvents>
</model>
</sbml>
Models/model_Peng2016_reduced.sbproj 0 → 100644
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